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›› 2018, Vol. 40 ›› Issue (6): 434-440.

• 论文与报告 • 上一篇    下一篇

基于高通量测序的东海带鱼肠道菌群结构分析

油九菊,柳敏海,殷小龙,李伟业,傅荣兵,徐志进   

  1. 浙江省舟山市水产研究所
  • 收稿日期:2018-10-18 修回日期:2018-11-01 出版日期:2018-12-25 发布日期:2018-12-26
  • 通讯作者: 徐志进

Analysis of bacterial communities‘ structure in intestinal flora of Trichiurus haumela based on high - throughput sequencing

  • Received:2018-10-18 Revised:2018-11-01 Online:2018-12-25 Published:2018-12-26

摘要: 以东海带鱼为研究对象,利用高通量测序技术,分析了其肠道菌群结构特征。测序结果共获得36 129条有效序列,聚类到245个OUTs,有效序列中有4 条序列(0.01%) 无法进行物种分类,其余分属于16 个细菌门,共77个科、127个属。在门的水平上,相对丰度最高的是变形菌门(Proteobacteria,52.30%) ,其次为厚壁菌门(Fimiicutes,30.66%) ; 在属的水平上,以狐菌科(Vibrionaceae,49.38% ) 的发光杆菌属(Photohacterium,47.90%)、梭菌科 ( Clostridiaceae_ 1,25.40% ) 的分节丝状菌(Candidatus_ Arthromitus, 17.04% ) 为主。OTU稀释曲线逐渐趋于平缓,且覆盖率God’s Coverage指数为100%,表明样品测序深度足够大, OUT数量接近实际情况。

关键词: 高通量测序, 东海带鱼, 肠道, 菌群结构, high-throughput sequencing, Trichiurus haumela, intestinal flora, bacterial communities structure

Abstract: The structure of bacterial communities in intestinal flora of Trichiurus haumela was studied using high - throughput sequencing technology. As a result, a total of 36, 129 valid sequences were obtained,and clustering to 245 OUTs. Except for 4 sequences (0. 01%) could not be species classified,the rest belonged to 16 phyla,including 77 families, 127 genera. At the level of phylum, Proteobacteria was overwhelmingly dominant with high relative abundance up to 52.30%, followed by Firmicutes (30.66%) . At the level of genus, Photobacterium (47.90%) of Vibrionaceae (49.38%) and Candidatus 一 Arthromitus(17.04%) of Clostridiaceae一 1 (25.40%) were the main genera. Alpha diversity analysis showed that, the OTU dilution curve flatten out gradually,and the Good,s Coverage index was 100%, while the depth was large enough.