基于高通量测序的东海带鱼肠道菌群结构分析

    Analysis of bacterial communities' structure in intestinal flora of Trichiurus haumela based on high-throughput sequencing

    • 摘要: 以东海带鱼为研究对象,利用高通量测序技术,分析了其肠道菌群结构特征。测序结果共获得36 129条有效序列,聚类到245个OUTs,有效序列中有4条序列(0.01%)无法进行物种分类,其余分属于16个细菌门,共77个科、127个属。在门的水平上,相对丰度最高的是变形菌门(Proteobacteria,52.30%),其次为厚壁菌门(Firmicutes,30.66%);在属的水平上,以弧菌科(Vibrionaceae,49.38%)的发光杆菌属(Photobacterium,47.90%)、梭菌科(Clostridiaceae_1,25.40%)的分节丝状菌(Candidatus_Arthromitus,17.04%)为主。OTU稀释曲线逐渐趋于平缓,且覆盖率Good's Coverage指数为100%,表明样品测序深度足够大,OUT数量接近实际情况。

       

      Abstract: The structure of bacterial communities in intestinal flora of Trichiurus haumela was studied using high-throughput sequencing technology.As a result,a total of 36,129 valid sequences were obtained,and clustering to 245 OUTs.Except for 4 sequences (0.01%) could not be species classified,the rest belonged to 16 phyla,including 77 families,127 genera.At the level of phylum,Proteobacteria was overwhelmingly dominant with high relative abundance up to 52.30%,followed by Firmicutes (30.66%).At the level of genus,Photobacterium (47.90%) of Vibrionaceae (49.38%) and Candidatus_Arthromitus (17.04%) of Clostridiaceae_1 (25.40%) were the main genera.Alpha diversity analysis showed that,the OTU dilution curve flatten out gradually,and the Good's Coverage index was 100%,while the sequencing depth was large enough.

       

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